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9189f4ea4b
Sparse Cholesky factorization algorithms use a fill-reducing
ordering to permute the columns of the Jacobian matrix. There
are two ways of doing this.
1. Compute the Jacobian matrix in some order and then have the
factorization algorithm permute the columns of the Jacobian.
2. Compute the Jacobian with its columns already permuted.
The first option incurs a significant memory penalty. The
factorization algorithm has to make a copy of the permuted
Jacobian matrix.
Starting with this change Ceres pre-permutes the columns of the
Jacobian matrix and generally speaking, there is no performance
penalty for doing so.
In some rare cases, it is worth using a more complicated
reordering algorithm which has slightly better runtime
performance at the expense of an extra copy of the Jacobian
matrix. Setting Solver::Options::use_postordering to true
enables this tradeoff.
This change also removes Solver::Options::use_block_amd
as an option. All matrices are ordered using their block
structure. The ability to order them by their scalar
sparsity structure has been removed.
Here is what performance on looks like on some BAL problems.
Memory
======
HEAD pre-ordering
16-22106 137957376.0 113516544.0
49-7776 56688640.0 46628864.0
245-198739 1718005760.0 1383550976.0
257-65132 387715072.0 319512576.0
356-226730 2014826496.0 1626087424.0
744-543562 4903358464.0 3957878784.0
1024-110968 968626176.0 822071296.0
Time
====
HEAD pre-ordering
16-22106 3.8 3.7
49-7776 1.9 1.8
245-198739 82.6 81.9
257-65132 14.0 13.4
356-226730 98.8 95.8
744-543562 325.2 301.6
1024-110968 42.1 37.1
Change-Id: I6b2e25f3fed7310f88905386a7898ac94d37467e
362 lines
12 KiB
C++
362 lines
12 KiB
C++
// Ceres Solver - A fast non-linear least squares minimizer
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// Copyright 2010, 2011, 2012 Google Inc. All rights reserved.
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// http://code.google.com/p/ceres-solver/
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//
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are met:
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//
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// * Redistributions of source code must retain the above copyright notice,
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// this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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// * Neither the name of Google Inc. nor the names of its contributors may be
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// used to endorse or promote products derived from this software without
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// specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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// LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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// CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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// SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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// INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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// CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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// ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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// POSSIBILITY OF SUCH DAMAGE.
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//
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// Author: sameeragarwal@google.com (Sameer Agarwal)
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#include <algorithm>
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#include <ctime>
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#include <set>
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#include <vector>
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#ifndef CERES_NO_CXSPARSE
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#include "cs.h"
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#endif // CERES_NO_CXSPARSE
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#include "Eigen/Dense"
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#include "ceres/block_random_access_dense_matrix.h"
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#include "ceres/block_random_access_matrix.h"
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#include "ceres/block_random_access_sparse_matrix.h"
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#include "ceres/block_sparse_matrix.h"
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#include "ceres/block_structure.h"
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#include "ceres/detect_structure.h"
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#include "ceres/internal/eigen.h"
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#include "ceres/internal/port.h"
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#include "ceres/internal/scoped_ptr.h"
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#include "ceres/linear_solver.h"
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#include "ceres/schur_complement_solver.h"
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#include "ceres/suitesparse.h"
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#include "ceres/triplet_sparse_matrix.h"
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#include "ceres/types.h"
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#include "ceres/wall_time.h"
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namespace ceres {
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namespace internal {
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LinearSolver::Summary SchurComplementSolver::SolveImpl(
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BlockSparseMatrixBase* A,
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const double* b,
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const LinearSolver::PerSolveOptions& per_solve_options,
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double* x) {
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EventLogger event_logger("SchurComplementSolver::Solve");
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if (eliminator_.get() == NULL) {
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InitStorage(A->block_structure());
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DetectStructure(*A->block_structure(),
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options_.elimination_groups[0],
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&options_.row_block_size,
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&options_.e_block_size,
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&options_.f_block_size);
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eliminator_.reset(CHECK_NOTNULL(SchurEliminatorBase::Create(options_)));
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eliminator_->Init(options_.elimination_groups[0], A->block_structure());
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};
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fill(x, x + A->num_cols(), 0.0);
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event_logger.AddEvent("Setup");
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LinearSolver::Summary summary;
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summary.num_iterations = 1;
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summary.termination_type = FAILURE;
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eliminator_->Eliminate(A, b, per_solve_options.D, lhs_.get(), rhs_.get());
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event_logger.AddEvent("Eliminate");
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double* reduced_solution = x + A->num_cols() - lhs_->num_cols();
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const bool status = SolveReducedLinearSystem(reduced_solution);
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event_logger.AddEvent("ReducedSolve");
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if (!status) {
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return summary;
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}
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eliminator_->BackSubstitute(A, b, per_solve_options.D, reduced_solution, x);
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summary.termination_type = TOLERANCE;
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event_logger.AddEvent("BackSubstitute");
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return summary;
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}
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// Initialize a BlockRandomAccessDenseMatrix to store the Schur
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// complement.
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void DenseSchurComplementSolver::InitStorage(
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const CompressedRowBlockStructure* bs) {
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const int num_eliminate_blocks = options().elimination_groups[0];
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const int num_col_blocks = bs->cols.size();
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vector<int> blocks(num_col_blocks - num_eliminate_blocks, 0);
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for (int i = num_eliminate_blocks, j = 0;
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i < num_col_blocks;
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++i, ++j) {
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blocks[j] = bs->cols[i].size;
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}
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set_lhs(new BlockRandomAccessDenseMatrix(blocks));
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set_rhs(new double[lhs()->num_rows()]);
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}
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// Solve the system Sx = r, assuming that the matrix S is stored in a
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// BlockRandomAccessDenseMatrix. The linear system is solved using
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// Eigen's Cholesky factorization.
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bool DenseSchurComplementSolver::SolveReducedLinearSystem(double* solution) {
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const BlockRandomAccessDenseMatrix* m =
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down_cast<const BlockRandomAccessDenseMatrix*>(lhs());
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const int num_rows = m->num_rows();
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// The case where there are no f blocks, and the system is block
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// diagonal.
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if (num_rows == 0) {
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return true;
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}
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// TODO(sameeragarwal): Add proper error handling; this completely ignores
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// the quality of the solution to the solve.
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VectorRef(solution, num_rows) =
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ConstMatrixRef(m->values(), num_rows, num_rows)
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.selfadjointView<Eigen::Upper>()
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.ldlt()
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.solve(ConstVectorRef(rhs(), num_rows));
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return true;
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}
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#if !defined(CERES_NO_SUITESPARSE) || !defined(CERES_NO_CXSPARE)
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SparseSchurComplementSolver::SparseSchurComplementSolver(
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const LinearSolver::Options& options)
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: SchurComplementSolver(options) {
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#ifndef CERES_NO_SUITESPARSE
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factor_ = NULL;
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#endif // CERES_NO_SUITESPARSE
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#ifndef CERES_NO_CXSPARSE
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cxsparse_factor_ = NULL;
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#endif // CERES_NO_CXSPARSE
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}
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SparseSchurComplementSolver::~SparseSchurComplementSolver() {
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#ifndef CERES_NO_SUITESPARSE
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if (factor_ != NULL) {
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ss_.Free(factor_);
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factor_ = NULL;
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}
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#endif // CERES_NO_SUITESPARSE
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#ifndef CERES_NO_CXSPARSE
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if (cxsparse_factor_ != NULL) {
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cxsparse_.Free(cxsparse_factor_);
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cxsparse_factor_ = NULL;
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}
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#endif // CERES_NO_CXSPARSE
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}
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// Determine the non-zero blocks in the Schur Complement matrix, and
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// initialize a BlockRandomAccessSparseMatrix object.
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void SparseSchurComplementSolver::InitStorage(
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const CompressedRowBlockStructure* bs) {
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const int num_eliminate_blocks = options().elimination_groups[0];
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const int num_col_blocks = bs->cols.size();
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const int num_row_blocks = bs->rows.size();
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blocks_.resize(num_col_blocks - num_eliminate_blocks, 0);
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for (int i = num_eliminate_blocks; i < num_col_blocks; ++i) {
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blocks_[i - num_eliminate_blocks] = bs->cols[i].size;
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}
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set<pair<int, int> > block_pairs;
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for (int i = 0; i < blocks_.size(); ++i) {
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block_pairs.insert(make_pair(i, i));
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}
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int r = 0;
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while (r < num_row_blocks) {
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int e_block_id = bs->rows[r].cells.front().block_id;
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if (e_block_id >= num_eliminate_blocks) {
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break;
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}
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vector<int> f_blocks;
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// Add to the chunk until the first block in the row is
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// different than the one in the first row for the chunk.
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for (; r < num_row_blocks; ++r) {
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const CompressedRow& row = bs->rows[r];
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if (row.cells.front().block_id != e_block_id) {
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break;
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}
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// Iterate over the blocks in the row, ignoring the first
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// block since it is the one to be eliminated.
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for (int c = 1; c < row.cells.size(); ++c) {
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const Cell& cell = row.cells[c];
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f_blocks.push_back(cell.block_id - num_eliminate_blocks);
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}
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}
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sort(f_blocks.begin(), f_blocks.end());
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f_blocks.erase(unique(f_blocks.begin(), f_blocks.end()), f_blocks.end());
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for (int i = 0; i < f_blocks.size(); ++i) {
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for (int j = i + 1; j < f_blocks.size(); ++j) {
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block_pairs.insert(make_pair(f_blocks[i], f_blocks[j]));
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}
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}
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}
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// Remaing rows do not contribute to the chunks and directly go
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// into the schur complement via an outer product.
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for (; r < num_row_blocks; ++r) {
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const CompressedRow& row = bs->rows[r];
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CHECK_GE(row.cells.front().block_id, num_eliminate_blocks);
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for (int i = 0; i < row.cells.size(); ++i) {
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int r_block1_id = row.cells[i].block_id - num_eliminate_blocks;
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for (int j = 0; j < row.cells.size(); ++j) {
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int r_block2_id = row.cells[j].block_id - num_eliminate_blocks;
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if (r_block1_id <= r_block2_id) {
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block_pairs.insert(make_pair(r_block1_id, r_block2_id));
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}
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}
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}
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}
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set_lhs(new BlockRandomAccessSparseMatrix(blocks_, block_pairs));
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set_rhs(new double[lhs()->num_rows()]);
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}
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bool SparseSchurComplementSolver::SolveReducedLinearSystem(double* solution) {
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switch (options().sparse_linear_algebra_library) {
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case SUITE_SPARSE:
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return SolveReducedLinearSystemUsingSuiteSparse(solution);
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case CX_SPARSE:
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return SolveReducedLinearSystemUsingCXSparse(solution);
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default:
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LOG(FATAL) << "Unknown sparse linear algebra library : "
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<< options().sparse_linear_algebra_library;
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}
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LOG(FATAL) << "Unknown sparse linear algebra library : "
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<< options().sparse_linear_algebra_library;
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return false;
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}
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#ifndef CERES_NO_SUITESPARSE
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// Solve the system Sx = r, assuming that the matrix S is stored in a
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// BlockRandomAccessSparseMatrix. The linear system is solved using
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// CHOLMOD's sparse cholesky factorization routines.
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bool SparseSchurComplementSolver::SolveReducedLinearSystemUsingSuiteSparse(
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double* solution) {
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TripletSparseMatrix* tsm =
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const_cast<TripletSparseMatrix*>(
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down_cast<const BlockRandomAccessSparseMatrix*>(lhs())->matrix());
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const int num_rows = tsm->num_rows();
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// The case where there are no f blocks, and the system is block
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// diagonal.
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if (num_rows == 0) {
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return true;
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}
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cholmod_sparse* cholmod_lhs = ss_.CreateSparseMatrix(tsm);
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// The matrix is symmetric, and the upper triangular part of the
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// matrix contains the values.
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cholmod_lhs->stype = 1;
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cholmod_dense* cholmod_rhs =
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ss_.CreateDenseVector(const_cast<double*>(rhs()), num_rows, num_rows);
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// Symbolic factorization is computed if we don't already have one handy.
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if (factor_ == NULL) {
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factor_ = ss_.BlockAnalyzeCholesky(cholmod_lhs, blocks_, blocks_);
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}
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cholmod_dense* cholmod_solution =
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ss_.SolveCholesky(cholmod_lhs, factor_, cholmod_rhs);
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ss_.Free(cholmod_lhs);
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cholmod_lhs = NULL;
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ss_.Free(cholmod_rhs);
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cholmod_rhs = NULL;
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if (cholmod_solution == NULL) {
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LOG(WARNING) << "CHOLMOD solve failed.";
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return false;
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}
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VectorRef(solution, num_rows)
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= VectorRef(static_cast<double*>(cholmod_solution->x), num_rows);
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ss_.Free(cholmod_solution);
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return true;
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}
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#else
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bool SparseSchurComplementSolver::SolveReducedLinearSystemUsingSuiteSparse(
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double* solution) {
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LOG(FATAL) << "No SuiteSparse support in Ceres.";
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return false;
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}
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#endif // CERES_NO_SUITESPARSE
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#ifndef CERES_NO_CXSPARSE
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// Solve the system Sx = r, assuming that the matrix S is stored in a
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// BlockRandomAccessSparseMatrix. The linear system is solved using
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// CXSparse's sparse cholesky factorization routines.
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bool SparseSchurComplementSolver::SolveReducedLinearSystemUsingCXSparse(
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double* solution) {
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// Extract the TripletSparseMatrix that is used for actually storing S.
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TripletSparseMatrix* tsm =
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const_cast<TripletSparseMatrix*>(
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down_cast<const BlockRandomAccessSparseMatrix*>(lhs())->matrix());
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const int num_rows = tsm->num_rows();
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// The case where there are no f blocks, and the system is block
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// diagonal.
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if (num_rows == 0) {
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return true;
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}
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cs_di* lhs = CHECK_NOTNULL(cxsparse_.CreateSparseMatrix(tsm));
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VectorRef(solution, num_rows) = ConstVectorRef(rhs(), num_rows);
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// Compute symbolic factorization if not available.
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if (cxsparse_factor_ == NULL) {
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cxsparse_factor_ = CHECK_NOTNULL(cxsparse_.AnalyzeCholesky(lhs));
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}
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// Solve the linear system.
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bool ok = cxsparse_.SolveCholesky(lhs, cxsparse_factor_, solution);
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cxsparse_.Free(lhs);
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return ok;
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}
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#else
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bool SparseSchurComplementSolver::SolveReducedLinearSystemUsingCXSparse(
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double* solution) {
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LOG(FATAL) << "No CXSparse support in Ceres.";
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return false;
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}
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#endif // CERES_NO_CXPARSE
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#endif // !defined(CERES_NO_SUITESPARSE) || !defined(CERES_NO_CXSPARE)
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} // namespace internal
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} // namespace ceres
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