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7b8f675bfd
- Change formatting standard to Cpp11. Main difference is not having the space between two closing >> for nested templates. We don't choose c++14, because older versions of clang-format (version 9 and earlier) don't know this value yet, and it doesn't make a difference in the formatting. - Apply clang-format to all (non generated) internal source files. - Manually fix some code sections (clang-format on/off) and c-strings - Exclude some embedded external files with very different formatting (gtest/gmock) - Add script to format all source files Change-Id: Ic6cea41575ad6e37c9e136dbce176b0d505dc44d
604 lines
19 KiB
C++
604 lines
19 KiB
C++
// Ceres Solver - A fast non-linear least squares minimizer
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// Copyright 2015 Google Inc. All rights reserved.
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// http://ceres-solver.org/
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//
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are met:
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//
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// * Redistributions of source code must retain the above copyright notice,
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// this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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// * Neither the name of Google Inc. nor the names of its contributors may be
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// used to endorse or promote products derived from this software without
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// specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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// LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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// CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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// SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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// INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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// CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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// ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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// POSSIBILITY OF SUCH DAMAGE.
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//
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// Author: sameeragarwal@google.com (Sameer Agarwal)
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#include "ceres/compressed_row_sparse_matrix.h"
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#include <memory>
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#include <numeric>
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#include "Eigen/SparseCore"
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#include "ceres/casts.h"
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#include "ceres/crs_matrix.h"
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#include "ceres/internal/eigen.h"
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#include "ceres/linear_least_squares_problems.h"
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#include "ceres/random.h"
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#include "ceres/triplet_sparse_matrix.h"
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#include "glog/logging.h"
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#include "gtest/gtest.h"
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namespace ceres {
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namespace internal {
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using std::vector;
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static void CompareMatrices(const SparseMatrix* a, const SparseMatrix* b) {
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EXPECT_EQ(a->num_rows(), b->num_rows());
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EXPECT_EQ(a->num_cols(), b->num_cols());
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int num_rows = a->num_rows();
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int num_cols = a->num_cols();
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for (int i = 0; i < num_cols; ++i) {
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Vector x = Vector::Zero(num_cols);
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x(i) = 1.0;
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Vector y_a = Vector::Zero(num_rows);
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Vector y_b = Vector::Zero(num_rows);
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a->RightMultiply(x.data(), y_a.data());
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b->RightMultiply(x.data(), y_b.data());
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EXPECT_EQ((y_a - y_b).norm(), 0);
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}
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}
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class CompressedRowSparseMatrixTest : public ::testing::Test {
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protected:
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void SetUp() final {
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std::unique_ptr<LinearLeastSquaresProblem> problem(
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CreateLinearLeastSquaresProblemFromId(1));
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CHECK(problem != nullptr);
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tsm.reset(down_cast<TripletSparseMatrix*>(problem->A.release()));
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crsm.reset(CompressedRowSparseMatrix::FromTripletSparseMatrix(*tsm));
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num_rows = tsm->num_rows();
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num_cols = tsm->num_cols();
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vector<int>* row_blocks = crsm->mutable_row_blocks();
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row_blocks->resize(num_rows);
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std::fill(row_blocks->begin(), row_blocks->end(), 1);
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vector<int>* col_blocks = crsm->mutable_col_blocks();
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col_blocks->resize(num_cols);
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std::fill(col_blocks->begin(), col_blocks->end(), 1);
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}
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int num_rows;
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int num_cols;
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std::unique_ptr<TripletSparseMatrix> tsm;
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std::unique_ptr<CompressedRowSparseMatrix> crsm;
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};
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TEST_F(CompressedRowSparseMatrixTest, Scale) {
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Vector scale(num_cols);
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for (int i = 0; i < num_cols; ++i) {
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scale(i) = i + 1;
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}
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tsm->ScaleColumns(scale.data());
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crsm->ScaleColumns(scale.data());
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CompareMatrices(tsm.get(), crsm.get());
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}
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TEST_F(CompressedRowSparseMatrixTest, DeleteRows) {
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// Clear the row and column blocks as these are purely scalar tests.
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crsm->mutable_row_blocks()->clear();
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crsm->mutable_col_blocks()->clear();
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for (int i = 0; i < num_rows; ++i) {
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tsm->Resize(num_rows - i, num_cols);
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crsm->DeleteRows(crsm->num_rows() - tsm->num_rows());
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CompareMatrices(tsm.get(), crsm.get());
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}
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}
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TEST_F(CompressedRowSparseMatrixTest, AppendRows) {
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// Clear the row and column blocks as these are purely scalar tests.
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crsm->mutable_row_blocks()->clear();
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crsm->mutable_col_blocks()->clear();
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for (int i = 0; i < num_rows; ++i) {
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TripletSparseMatrix tsm_appendage(*tsm);
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tsm_appendage.Resize(i, num_cols);
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tsm->AppendRows(tsm_appendage);
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std::unique_ptr<CompressedRowSparseMatrix> crsm_appendage(
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CompressedRowSparseMatrix::FromTripletSparseMatrix(tsm_appendage));
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crsm->AppendRows(*crsm_appendage);
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CompareMatrices(tsm.get(), crsm.get());
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}
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}
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TEST_F(CompressedRowSparseMatrixTest, AppendAndDeleteBlockDiagonalMatrix) {
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int num_diagonal_rows = crsm->num_cols();
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std::unique_ptr<double[]> diagonal(new double[num_diagonal_rows]);
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for (int i = 0; i < num_diagonal_rows; ++i) {
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diagonal[i] = i;
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}
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vector<int> row_and_column_blocks;
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row_and_column_blocks.push_back(1);
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row_and_column_blocks.push_back(2);
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row_and_column_blocks.push_back(2);
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const vector<int> pre_row_blocks = crsm->row_blocks();
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const vector<int> pre_col_blocks = crsm->col_blocks();
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std::unique_ptr<CompressedRowSparseMatrix> appendage(
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CompressedRowSparseMatrix::CreateBlockDiagonalMatrix(
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diagonal.get(), row_and_column_blocks));
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crsm->AppendRows(*appendage);
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const vector<int> post_row_blocks = crsm->row_blocks();
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const vector<int> post_col_blocks = crsm->col_blocks();
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vector<int> expected_row_blocks = pre_row_blocks;
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expected_row_blocks.insert(expected_row_blocks.end(),
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row_and_column_blocks.begin(),
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row_and_column_blocks.end());
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vector<int> expected_col_blocks = pre_col_blocks;
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EXPECT_EQ(expected_row_blocks, crsm->row_blocks());
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EXPECT_EQ(expected_col_blocks, crsm->col_blocks());
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crsm->DeleteRows(num_diagonal_rows);
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EXPECT_EQ(crsm->row_blocks(), pre_row_blocks);
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EXPECT_EQ(crsm->col_blocks(), pre_col_blocks);
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}
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TEST_F(CompressedRowSparseMatrixTest, ToDenseMatrix) {
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Matrix tsm_dense;
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Matrix crsm_dense;
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tsm->ToDenseMatrix(&tsm_dense);
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crsm->ToDenseMatrix(&crsm_dense);
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EXPECT_EQ((tsm_dense - crsm_dense).norm(), 0.0);
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}
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TEST_F(CompressedRowSparseMatrixTest, ToCRSMatrix) {
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CRSMatrix crs_matrix;
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crsm->ToCRSMatrix(&crs_matrix);
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EXPECT_EQ(crsm->num_rows(), crs_matrix.num_rows);
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EXPECT_EQ(crsm->num_cols(), crs_matrix.num_cols);
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EXPECT_EQ(crsm->num_rows() + 1, crs_matrix.rows.size());
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EXPECT_EQ(crsm->num_nonzeros(), crs_matrix.cols.size());
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EXPECT_EQ(crsm->num_nonzeros(), crs_matrix.values.size());
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for (int i = 0; i < crsm->num_rows() + 1; ++i) {
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EXPECT_EQ(crsm->rows()[i], crs_matrix.rows[i]);
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}
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for (int i = 0; i < crsm->num_nonzeros(); ++i) {
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EXPECT_EQ(crsm->cols()[i], crs_matrix.cols[i]);
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EXPECT_EQ(crsm->values()[i], crs_matrix.values[i]);
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}
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}
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TEST(CompressedRowSparseMatrix, CreateBlockDiagonalMatrix) {
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vector<int> blocks;
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blocks.push_back(1);
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blocks.push_back(2);
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blocks.push_back(2);
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Vector diagonal(5);
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for (int i = 0; i < 5; ++i) {
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diagonal(i) = i + 1;
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}
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std::unique_ptr<CompressedRowSparseMatrix> matrix(
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CompressedRowSparseMatrix::CreateBlockDiagonalMatrix(diagonal.data(),
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blocks));
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EXPECT_EQ(matrix->num_rows(), 5);
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EXPECT_EQ(matrix->num_cols(), 5);
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EXPECT_EQ(matrix->num_nonzeros(), 9);
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EXPECT_EQ(blocks, matrix->row_blocks());
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EXPECT_EQ(blocks, matrix->col_blocks());
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Vector x(5);
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Vector y(5);
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x.setOnes();
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y.setZero();
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matrix->RightMultiply(x.data(), y.data());
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for (int i = 0; i < diagonal.size(); ++i) {
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EXPECT_EQ(y[i], diagonal[i]);
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}
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y.setZero();
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matrix->LeftMultiply(x.data(), y.data());
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for (int i = 0; i < diagonal.size(); ++i) {
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EXPECT_EQ(y[i], diagonal[i]);
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}
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Matrix dense;
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matrix->ToDenseMatrix(&dense);
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EXPECT_EQ((dense.diagonal() - diagonal).norm(), 0.0);
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}
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TEST(CompressedRowSparseMatrix, Transpose) {
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// 0 1 0 2 3 0
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// 4 6 7 0 0 8
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// 9 10 0 11 12 0
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// 13 0 14 15 9 0
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// 0 16 17 0 0 0
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// Block structure:
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// A A A A B B
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// A A A A B B
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// A A A A B B
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// C C C C D D
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// C C C C D D
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// C C C C D D
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CompressedRowSparseMatrix matrix(5, 6, 30);
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int* rows = matrix.mutable_rows();
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int* cols = matrix.mutable_cols();
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double* values = matrix.mutable_values();
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matrix.mutable_row_blocks()->push_back(3);
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matrix.mutable_row_blocks()->push_back(3);
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matrix.mutable_col_blocks()->push_back(4);
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matrix.mutable_col_blocks()->push_back(2);
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rows[0] = 0;
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cols[0] = 1;
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cols[1] = 3;
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cols[2] = 4;
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rows[1] = 3;
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cols[3] = 0;
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cols[4] = 1;
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cols[5] = 2;
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cols[6] = 5;
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rows[2] = 7;
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cols[7] = 0;
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cols[8] = 1;
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cols[9] = 3;
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cols[10] = 4;
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rows[3] = 11;
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cols[11] = 0;
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cols[12] = 2;
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cols[13] = 3;
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cols[14] = 4;
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rows[4] = 15;
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cols[15] = 1;
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cols[16] = 2;
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rows[5] = 17;
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std::copy(values, values + 17, cols);
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std::unique_ptr<CompressedRowSparseMatrix> transpose(matrix.Transpose());
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ASSERT_EQ(transpose->row_blocks().size(), matrix.col_blocks().size());
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for (int i = 0; i < transpose->row_blocks().size(); ++i) {
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EXPECT_EQ(transpose->row_blocks()[i], matrix.col_blocks()[i]);
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}
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ASSERT_EQ(transpose->col_blocks().size(), matrix.row_blocks().size());
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for (int i = 0; i < transpose->col_blocks().size(); ++i) {
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EXPECT_EQ(transpose->col_blocks()[i], matrix.row_blocks()[i]);
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}
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Matrix dense_matrix;
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matrix.ToDenseMatrix(&dense_matrix);
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Matrix dense_transpose;
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transpose->ToDenseMatrix(&dense_transpose);
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EXPECT_NEAR((dense_matrix - dense_transpose.transpose()).norm(), 0.0, 1e-14);
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}
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TEST(CompressedRowSparseMatrix, FromTripletSparseMatrix) {
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TripletSparseMatrix::RandomMatrixOptions options;
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options.num_rows = 5;
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options.num_cols = 7;
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options.density = 0.5;
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const int kNumTrials = 10;
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for (int i = 0; i < kNumTrials; ++i) {
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std::unique_ptr<TripletSparseMatrix> tsm(
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TripletSparseMatrix::CreateRandomMatrix(options));
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std::unique_ptr<CompressedRowSparseMatrix> crsm(
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CompressedRowSparseMatrix::FromTripletSparseMatrix(*tsm));
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Matrix expected;
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tsm->ToDenseMatrix(&expected);
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Matrix actual;
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crsm->ToDenseMatrix(&actual);
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EXPECT_NEAR((expected - actual).norm() / actual.norm(),
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0.0,
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std::numeric_limits<double>::epsilon())
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<< "\nexpected: \n"
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<< expected << "\nactual: \n"
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<< actual;
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}
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}
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TEST(CompressedRowSparseMatrix, FromTripletSparseMatrixTransposed) {
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TripletSparseMatrix::RandomMatrixOptions options;
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options.num_rows = 5;
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options.num_cols = 7;
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options.density = 0.5;
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const int kNumTrials = 10;
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for (int i = 0; i < kNumTrials; ++i) {
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std::unique_ptr<TripletSparseMatrix> tsm(
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TripletSparseMatrix::CreateRandomMatrix(options));
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std::unique_ptr<CompressedRowSparseMatrix> crsm(
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CompressedRowSparseMatrix::FromTripletSparseMatrixTransposed(*tsm));
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Matrix tmp;
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tsm->ToDenseMatrix(&tmp);
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Matrix expected = tmp.transpose();
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Matrix actual;
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crsm->ToDenseMatrix(&actual);
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EXPECT_NEAR((expected - actual).norm() / actual.norm(),
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0.0,
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std::numeric_limits<double>::epsilon())
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<< "\nexpected: \n"
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<< expected << "\nactual: \n"
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<< actual;
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}
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}
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typedef ::testing::tuple<CompressedRowSparseMatrix::StorageType> Param;
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static std::string ParamInfoToString(testing::TestParamInfo<Param> info) {
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if (::testing::get<0>(info.param) ==
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CompressedRowSparseMatrix::UPPER_TRIANGULAR) {
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return "UPPER";
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}
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if (::testing::get<0>(info.param) ==
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CompressedRowSparseMatrix::LOWER_TRIANGULAR) {
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return "LOWER";
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}
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return "UNSYMMETRIC";
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}
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class RightMultiplyTest : public ::testing::TestWithParam<Param> {};
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TEST_P(RightMultiplyTest, _) {
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const int kMinNumBlocks = 1;
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const int kMaxNumBlocks = 10;
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const int kMinBlockSize = 1;
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const int kMaxBlockSize = 5;
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const int kNumTrials = 10;
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for (int num_blocks = kMinNumBlocks; num_blocks < kMaxNumBlocks;
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++num_blocks) {
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for (int trial = 0; trial < kNumTrials; ++trial) {
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Param param = GetParam();
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CompressedRowSparseMatrix::RandomMatrixOptions options;
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options.num_col_blocks = num_blocks;
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options.min_col_block_size = kMinBlockSize;
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options.max_col_block_size = kMaxBlockSize;
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options.num_row_blocks = 2 * num_blocks;
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options.min_row_block_size = kMinBlockSize;
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options.max_row_block_size = kMaxBlockSize;
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options.block_density = std::max(0.5, RandDouble());
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options.storage_type = ::testing::get<0>(param);
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std::unique_ptr<CompressedRowSparseMatrix> matrix(
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CompressedRowSparseMatrix::CreateRandomMatrix(options));
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const int num_rows = matrix->num_rows();
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const int num_cols = matrix->num_cols();
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Vector x(num_cols);
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x.setRandom();
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Vector actual_y(num_rows);
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actual_y.setZero();
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matrix->RightMultiply(x.data(), actual_y.data());
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Matrix dense;
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matrix->ToDenseMatrix(&dense);
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Vector expected_y;
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if (::testing::get<0>(param) ==
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CompressedRowSparseMatrix::UPPER_TRIANGULAR) {
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expected_y = dense.selfadjointView<Eigen::Upper>() * x;
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} else if (::testing::get<0>(param) ==
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CompressedRowSparseMatrix::LOWER_TRIANGULAR) {
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expected_y = dense.selfadjointView<Eigen::Lower>() * x;
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} else {
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expected_y = dense * x;
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}
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ASSERT_NEAR((expected_y - actual_y).norm() / actual_y.norm(),
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0.0,
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std::numeric_limits<double>::epsilon() * 10)
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<< "\n"
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<< dense << "x:\n"
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<< x.transpose() << "\n"
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<< "expected: \n"
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<< expected_y.transpose() << "\n"
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<< "actual: \n"
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<< actual_y.transpose();
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}
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}
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}
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INSTANTIATE_TEST_SUITE_P(
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CompressedRowSparseMatrix,
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RightMultiplyTest,
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::testing::Values(CompressedRowSparseMatrix::LOWER_TRIANGULAR,
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CompressedRowSparseMatrix::UPPER_TRIANGULAR,
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CompressedRowSparseMatrix::UNSYMMETRIC),
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ParamInfoToString);
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class LeftMultiplyTest : public ::testing::TestWithParam<Param> {};
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TEST_P(LeftMultiplyTest, _) {
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const int kMinNumBlocks = 1;
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const int kMaxNumBlocks = 10;
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const int kMinBlockSize = 1;
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const int kMaxBlockSize = 5;
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const int kNumTrials = 10;
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for (int num_blocks = kMinNumBlocks; num_blocks < kMaxNumBlocks;
|
|
++num_blocks) {
|
|
for (int trial = 0; trial < kNumTrials; ++trial) {
|
|
Param param = GetParam();
|
|
CompressedRowSparseMatrix::RandomMatrixOptions options;
|
|
options.num_col_blocks = num_blocks;
|
|
options.min_col_block_size = kMinBlockSize;
|
|
options.max_col_block_size = kMaxBlockSize;
|
|
options.num_row_blocks = 2 * num_blocks;
|
|
options.min_row_block_size = kMinBlockSize;
|
|
options.max_row_block_size = kMaxBlockSize;
|
|
options.block_density = std::max(0.5, RandDouble());
|
|
options.storage_type = ::testing::get<0>(param);
|
|
std::unique_ptr<CompressedRowSparseMatrix> matrix(
|
|
CompressedRowSparseMatrix::CreateRandomMatrix(options));
|
|
const int num_rows = matrix->num_rows();
|
|
const int num_cols = matrix->num_cols();
|
|
|
|
Vector x(num_rows);
|
|
x.setRandom();
|
|
|
|
Vector actual_y(num_cols);
|
|
actual_y.setZero();
|
|
matrix->LeftMultiply(x.data(), actual_y.data());
|
|
|
|
Matrix dense;
|
|
matrix->ToDenseMatrix(&dense);
|
|
Vector expected_y;
|
|
if (::testing::get<0>(param) ==
|
|
CompressedRowSparseMatrix::UPPER_TRIANGULAR) {
|
|
expected_y = dense.selfadjointView<Eigen::Upper>() * x;
|
|
} else if (::testing::get<0>(param) ==
|
|
CompressedRowSparseMatrix::LOWER_TRIANGULAR) {
|
|
expected_y = dense.selfadjointView<Eigen::Lower>() * x;
|
|
} else {
|
|
expected_y = dense.transpose() * x;
|
|
}
|
|
|
|
ASSERT_NEAR((expected_y - actual_y).norm() / actual_y.norm(),
|
|
0.0,
|
|
std::numeric_limits<double>::epsilon() * 10)
|
|
<< "\n"
|
|
<< dense << "x\n"
|
|
<< x.transpose() << "\n"
|
|
<< "expected: \n"
|
|
<< expected_y.transpose() << "\n"
|
|
<< "actual: \n"
|
|
<< actual_y.transpose();
|
|
}
|
|
}
|
|
}
|
|
|
|
INSTANTIATE_TEST_SUITE_P(
|
|
CompressedRowSparseMatrix,
|
|
LeftMultiplyTest,
|
|
::testing::Values(CompressedRowSparseMatrix::LOWER_TRIANGULAR,
|
|
CompressedRowSparseMatrix::UPPER_TRIANGULAR,
|
|
CompressedRowSparseMatrix::UNSYMMETRIC),
|
|
ParamInfoToString);
|
|
|
|
class SquaredColumnNormTest : public ::testing::TestWithParam<Param> {};
|
|
|
|
TEST_P(SquaredColumnNormTest, _) {
|
|
const int kMinNumBlocks = 1;
|
|
const int kMaxNumBlocks = 10;
|
|
const int kMinBlockSize = 1;
|
|
const int kMaxBlockSize = 5;
|
|
const int kNumTrials = 10;
|
|
|
|
for (int num_blocks = kMinNumBlocks; num_blocks < kMaxNumBlocks;
|
|
++num_blocks) {
|
|
for (int trial = 0; trial < kNumTrials; ++trial) {
|
|
Param param = GetParam();
|
|
CompressedRowSparseMatrix::RandomMatrixOptions options;
|
|
options.num_col_blocks = num_blocks;
|
|
options.min_col_block_size = kMinBlockSize;
|
|
options.max_col_block_size = kMaxBlockSize;
|
|
options.num_row_blocks = 2 * num_blocks;
|
|
options.min_row_block_size = kMinBlockSize;
|
|
options.max_row_block_size = kMaxBlockSize;
|
|
options.block_density = std::max(0.5, RandDouble());
|
|
options.storage_type = ::testing::get<0>(param);
|
|
std::unique_ptr<CompressedRowSparseMatrix> matrix(
|
|
CompressedRowSparseMatrix::CreateRandomMatrix(options));
|
|
const int num_cols = matrix->num_cols();
|
|
|
|
Vector actual(num_cols);
|
|
actual.setZero();
|
|
matrix->SquaredColumnNorm(actual.data());
|
|
|
|
Matrix dense;
|
|
matrix->ToDenseMatrix(&dense);
|
|
Vector expected;
|
|
if (::testing::get<0>(param) ==
|
|
CompressedRowSparseMatrix::UPPER_TRIANGULAR) {
|
|
const Matrix full = dense.selfadjointView<Eigen::Upper>();
|
|
expected = full.colwise().squaredNorm();
|
|
} else if (::testing::get<0>(param) ==
|
|
CompressedRowSparseMatrix::LOWER_TRIANGULAR) {
|
|
const Matrix full = dense.selfadjointView<Eigen::Lower>();
|
|
expected = full.colwise().squaredNorm();
|
|
} else {
|
|
expected = dense.colwise().squaredNorm();
|
|
}
|
|
|
|
ASSERT_NEAR((expected - actual).norm() / actual.norm(),
|
|
0.0,
|
|
std::numeric_limits<double>::epsilon() * 10)
|
|
<< "\n"
|
|
<< dense << "expected: \n"
|
|
<< expected.transpose() << "\n"
|
|
<< "actual: \n"
|
|
<< actual.transpose();
|
|
}
|
|
}
|
|
}
|
|
|
|
INSTANTIATE_TEST_SUITE_P(
|
|
CompressedRowSparseMatrix,
|
|
SquaredColumnNormTest,
|
|
::testing::Values(CompressedRowSparseMatrix::LOWER_TRIANGULAR,
|
|
CompressedRowSparseMatrix::UPPER_TRIANGULAR,
|
|
CompressedRowSparseMatrix::UNSYMMETRIC),
|
|
ParamInfoToString);
|
|
|
|
// TODO(sameeragarwal) Add tests for the random matrix creation methods.
|
|
|
|
} // namespace internal
|
|
} // namespace ceres
|